There is a crafting bug on the Switch and Switch 2 versions of the game where items are disappearing. I suggest that you keep no items in your inventory while crafting apart from the crafting materials, that is. My 20 Calico eggs disappeared and other people are having the same problems.
 

Duckbill

Cowpoke
While not exhaustive, I have confirmed that the following items may be lost due to this bug.
If this information proves helpful in any way, I would be honored.

Torch
Hay
Crab Pot
White Algae / Green Algae
Sea Jelly / River Jelly / Cave Jelly
Seaweed
Coffee
Oil
Rice
Sugar
Vinegar
Wheat Flour
Energy Tonic
Muscle Remedy
Field Snack
Bug Steak
Tent Kit
Cookout Kit
Butterfly Powder
Monster Musk
Prize Ticket
Golden Animal Cracker
Lucky Purple Shorts
Trimmed Lucky Purple Shorts
Stardrop Tea
Dragon Tooth
Fairy Dust
Horse Flute
Pierre's Missing Stocklist
Qi Seasoning
Enricher
Pressure Nozzle
Galaxy Soul
Blue Grass Starter
Geode / Frozen Geode / Magma Geode / Omni Geode
Artifact Trove
Golden Coconut
Mystery Box / Golden Mystery Box
Warp Totem: Beach / Warp Totem: Desert / Warp Totem: Farm / Warp Totem: Island / Warp Totem: Mountains
Rain Totem
Treasure Totem
All Trinkets
All Slime Eggs
All Artifacts / Golden Pumpkin / Treasure Chest / Pearl
All Catalogues
All Furnitures / All Wallpapers / All Flooring Types
Secret Notes
Journal Scraps
Lost Axe (in the Robin's Quest)
Berry Basket (in the Linus's Quest)
Ectoplasm (in the Wizard's Special Order Quest)
Prismatic Jelly (in the Wizard's Special Order Quest)
7 Items in the Birdie's Quest
9 Items donated to Professor Snail
Ornate Necklace
Far Away Stone
Golden Tag (in the Trout Derby festival)
Calico Egg
Bouquet
Wilted Bouquet
Mermaid's Pendant
 
While not exhaustive, I have confirmed that the following items may be lost due to this bug.
If this information proves helpful in any way, I would be honored.

Torch
Hay
Crab Pot
White Algae / Green Algae
Sea Jelly / River Jelly / Cave Jelly
Seaweed
Coffee
Oil
Rice
Sugar
Vinegar
Wheat Flour
Energy Tonic
Muscle Remedy
Field Snack
Bug Steak
Tent Kit
Cookout Kit
Butterfly Powder
Monster Musk
Prize Ticket
Golden Animal Cracker
Lucky Purple Shorts
Trimmed Lucky Purple Shorts
Stardrop Tea
Dragon Tooth
Fairy Dust
Horse Flute
Pierre's Missing Stocklist
Qi Seasoning
Enricher
Pressure Nozzle
Galaxy Soul
Blue Grass Starter
Geode / Frozen Geode / Magma Geode / Omni Geode
Artifact Trove
Golden Coconut
Mystery Box / Golden Mystery Box
Warp Totem: Beach / Warp Totem: Desert / Warp Totem: Farm / Warp Totem: Island / Warp Totem: Mountains
Rain Totem
Treasure Totem
All Trinkets
All Slime Eggs
All Artifacts / Golden Pumpkin / Treasure Chest / Pearl
All Catalogues
All Furnitures / All Wallpapers / All Flooring Types
Secret Notes
Journal Scraps
Lost Axe (in the Robin's Quest)
Berry Basket (in the Linus's Quest)
Ectoplasm (in the Wizard's Special Order Quest)
Prismatic Jelly (in the Wizard's Special Order Quest)
7 Items in the Birdie's Quest
9 Items donated to Professor Snail
Ornate Necklace
Far Away Stone
Golden Tag (in the Trout Derby festival)
Calico Egg
Bouquet
Wilted Bouquet
Mermaid's Pendant
Thank you!
 

veronicaab

Greenhorn
I tried looking it up because I've mostly had no issues with crafting until the other day when I tried to make some fish smokers and it consumed the pirate's locket. Thankfully I made them right before I was about to go hand in birdie's quest, so I noticed right away and was able to exit without saving. But anyway, it looks like it affects any recipe that uses an object new to 1.6. So that's all the recipes that call for moss, the three fishing jellies, or mystic syrup
 

Duckbill

Cowpoke
I tried looking it up because I've mostly had no issues with crafting until the other day when I tried to make some fish smokers and it consumed the pirate's locket. Thankfully I made them right before I was about to go hand in birdie's quest, so I noticed right away and was able to exit without saving. But anyway, it looks like it affects any recipe that uses an object new to 1.6. So that's all the recipes that call for moss, the three fishing jellies, or mystic syrup
That's not all.

There are other items that can cause misrecognition.
They are listed below.

Moss
Mystic Syrup
Furnace
Worm Bin
Sea Jelly / River Jelly / Cave Jelly


Therefore, until the next update arrives, it's best to refrain from crafting the following items.

Blue Grass Starter
Heavy Furnace
Deluxe Worm Bin
Fish Smoker
Mushroom Log
Speed-Gro
Treasure Totem
Statue Of Blessings
Deluxe Bait
Challenge Bait
Moss Soup
 
While not exhaustive, I have confirmed that the following items may be lost due to this bug.
If this information proves helpful in any way, I would be honored.

Torch
Hay
Crab Pot
White Algae / Green Algae
Sea Jelly / River Jelly / Cave Jelly
Seaweed
Coffee
Oil
Rice
Sugar
Vinegar
Wheat Flour
Energy Tonic
Muscle Remedy
Field Snack
Bug Steak
Tent Kit
Cookout Kit
Butterfly Powder
Monster Musk
Prize Ticket
Golden Animal Cracker
Lucky Purple Shorts
Trimmed Lucky Purple Shorts
Stardrop Tea
Dragon Tooth
Fairy Dust
Horse Flute
Pierre's Missing Stocklist
Qi Seasoning
Enricher
Pressure Nozzle
Galaxy Soul
Blue Grass Starter
Geode / Frozen Geode / Magma Geode / Omni Geode
Artifact Trove
Golden Coconut
Mystery Box / Golden Mystery Box
Warp Totem: Beach / Warp Totem: Desert / Warp Totem: Farm / Warp Totem: Island / Warp Totem: Mountains
Rain Totem
Treasure Totem
All Trinkets
All Slime Eggs
All Artifacts / Golden Pumpkin / Treasure Chest / Pearl
All Catalogues
All Furnitures / All Wallpapers / All Flooring Types
Secret Notes
Journal Scraps
Lost Axe (in the Robin's Quest)
Berry Basket (in the Linus's Quest)
Ectoplasm (in the Wizard's Special Order Quest)
Prismatic Jelly (in the Wizard's Special Order Quest)
7 Items in the Birdie's Quest
9 Items donated to Professor Snail
Ornate Necklace
Far Away Stone
Golden Tag (in the Trout Derby festival)
Calico Egg
Bouquet
Wilted Bouquet
Mermaid's Pendant
That's not all.

There are other items that can cause misrecognition.
They are listed below.

Moss
Mystic Syrup
Furnace
Worm Bin
Sea Jelly / River Jelly / Cave Jelly


Therefore, until the next update arrives, it's best to refrain from crafting the following items.

Blue Grass Starter
Heavy Furnace
Deluxe Worm Bin
Fish Smoker
Mushroom Log
Speed-Gro
Treasure Totem
Statue Of Blessings
Deluxe Bait
Challenge Bait
Moss Soup
Thank you! This is very helpful.
 

Girtzrm

Newcomer
While not exhaustive, I have confirmed that the following items may be lost due to this bug.
If this information proves helpful in any way, I would be honored.

Torch
Hay
Crab Pot
White Algae / Green Algae
Sea Jelly / River Jelly / Cave Jelly
Seaweed
Coffee
Oil
Rice
Sugar
Vinegar
Wheat Flour
Energy Tonic
Muscle Remedy
Field Snack
Bug Steak
Tent Kit
Cookout Kit
Butterfly Powder
Monster Musk
Prize Ticket
Golden Animal Cracker
Lucky Purple Shorts
Trimmed Lucky Purple Shorts
Stardrop Tea
Dragon Tooth
Fairy Dust
Horse Flute
Pierre's Missing Stocklist
Qi Seasoning
Enricher
Pressure Nozzle
Galaxy Soul
Blue Grass Starter
Geode / Frozen Geode / Magma Geode / Omni Geode
Artifact Trove
Golden Coconut
Mystery Box / Golden Mystery Box
Warp Totem: Beach / Warp Totem: Desert / Warp Totem: Farm / Warp Totem: Island / Warp Totem: Mountains
Rain Totem
Treasure Totem
All Trinkets
All Slime Eggs
All Artifacts / Golden Pumpkin / Treasure Chest / Pearl
All Catalogues
All Furnitures / All Wallpapers / All Flooring Types
Secret Notes
Journal Scraps
Lost Axe (in the Robin's Quest)
Berry Basket (in the Linus's Quest)
Ectoplasm (in the Wizard's Special Order Quest)
Prismatic Jelly (in the Wizard's Special Order Quest)
7 Items in the Birdie's Quest
9 Items donated to Professor Snail
Ornate Necklace
Far Away Stone
Golden Tag (in the Trout Derby festival)
Calico Egg
Bouquet
Wilted Bouquet
Mermaid's Pendant
Same. I have lost my Horse Flute, numerous crab pots, AND my current Qi challenge to earn gems so I can buy back my Horse Flute has disappeared from my Journal. It’s ridiculous.
 

Duckbill

Cowpoke
I'm pretty sure my sewing machine has been eaten too when crafting 😭 hopefully there's a way I can get it back!
Sorry, I couldn't confirm that the Sewing Machine disappears due to the crafting bug...

You might be able to buy it back from the crow in the Secret Woods!
 
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