When I made a similar long gameplay video, I just let the recorder run for the whole session and then made a rough cut in editing to get rid of slow or repetitive parts, like watering crops or mining. Breaking it up into separate days sounds nice for organizing, but I found that hitting record once per big play session felt less disruptive and made things easier to keep track of. The main editing challenge is how much time you want the final video to be, because otherwise you can end up with a lot of footage to sift through! To actually record everything smoothly, I always look for a good
screen recorder for pc that lets me set what part of the screen to capture and adjust the audio, since I edit a lot in post. Makes life a lot easier for this kind of project.