Switch Bugs after updating on switch.

[Shatterdechoes]

After updating the game a few days ago on switch, my game has been glitching every few minutes or so. Then today as I was in the middle of playing my right joycon suddenly stopped working, saying it wasn't paired, I detached the joycon and it worked perfectly fine, so I reattached the joycon and it wouldn't work in game. Outside the game my joycons work perfectly, I even tested it on other games and they worked fine. I relaunched my save file and it did it again. I even tried to play with a different set of joycons and it still happened. I also had a glitch where my husband (Harvey) in the game just disappeared for a whole ingame day. I'm frustrated as I only play handheld on the switch. Please help!! I'm on year 5 of the game.

Version is 1.6.9.36.
Switch, single player.